So, you seem like you are in the right track.
Use a 1/4" drill bit as a mandrel to hold the beginner shells for sanding.
For intermediate (or any upcoming load that uses small primers) you use a T25 Torx bit as the mandrel. I recommend a new one with crisp edges. You can also use the torx bit after smoothing the cases to ream out the primer pocket to size.
The beginner loads use a 209 primer. The 209 primers protrude out the back of the case because of the incorporated rim/flange. This makes up for the difference in headspace.
The headspace gauge is .2mm thicker than the shells (or beginner rim+209 flange thickness). This build with 43r Ammo is very forgiving with headspace. If you accidently used a beginner shell to headspace, you can just file some off of the breech end of the barrel, and file the extractor groove a little deeper. If you mess up and have too much headspace, you can sand some off of the front of the receiver to make up for it.